{"id":896,"date":"2016-01-05T20:12:10","date_gmt":"2016-01-05T20:12:10","guid":{"rendered":"http:\/\/testing.komplekscreative.com\/yoderlab\/cms\/?page_id=896"},"modified":"2024-11-19T19:59:19","modified_gmt":"2024-11-19T19:59:19","slug":"divergence-time-estimation","status":"publish","type":"page","link":"https:\/\/yoderlab.org\/cms\/research\/cryptic-speciation-in-mouse-lemurs\/divergence-time-estimation\/","title":{"rendered":"Divergence Time Estimation"},"content":{"rendered":"\n\n\n\n\n\n\n\n\n\n\n\n
Year<\/th>\nTitle<\/th>\nFormat<\/th>\n<\/tr>\n
2023<\/td>\n Estimation of species divergence times in presence of cross-species gene flow.<\/a> Tiley G.P., Flouri T., Jiao X., Poelstra J.W., Xu B., Zhu T., Rannala B., Yoder A.D., and Z. Yang. Systematic Biology.<\/td>\nPDF<\/a><\/td>\n<\/tr>\n
2023<\/td>\n Not one, but multiple radiations underlie the biodiversity of Madagascar\u2019s endangered lemurs.<\/a> Everson K.M., Pozzi L., Barrett M.A., Blair M.E., Donohue M.E., Kappeler P.M., Kitchener A.C., Lemmon A.R., Lemmon E.M., Pav\u00f3n-V\u00e1zquez C.J., Radespiel U., Randrianambinina B., Rasoloarison R.M., Rasoloharijaona S., Roos C., Salmona J., Yoder A.D., Zenil-Ferguson R., Zinner D., and D.W. Weisrock. BioRxiv.<\/td>\nPDF<\/a><\/td>\n<\/tr>\n
2021<\/td>\n Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events.<\/a> Akkose U., Kaya V.O., Lindsey-Boltz L., Karagoz Z., Brown A.D., Larsen P.A., Yoder A.D., Sancar A., and O. Adebali. BMC genomics.<\/td>\nPDF<\/a><\/td>\n<\/tr>\n
2020<\/td>\nMolecular clocks without rocks: new solutions for old problems.<\/a> Tiley G.P., Poelstra J.W., Dos Reis M., Yang Z., and A.D. Yoder. Trends in Genetics.<\/td>\nPDF<\/a><\/td>\n<\/tr>\n
2018<\/td>\nUsing Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case.<\/a> dos Reis M., Gunnell G.F., Barba-Montoya J., et al<\/em>. Systematic Biology.<\/td>\nPDF<\/a><\/td>\n<\/tr>\n
2013<\/td>\nFossils Versus Clocks. <\/a>Yoder, A.D. Science, 339:656-658.<\/td>\nPDF<\/a><\/td>\n<\/tr>\n
2004<\/td>\nDivergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context. <\/a>Yoder, A.D. and Z. Yang. Molecular Ecology, 13:757-773.<\/td>\nPDF<\/a><\/td>\n<\/tr>\n
2003<\/td>\nComparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse lemur species. <\/a>Yang, Z. and A.D. Yoder. Systematic Biology, 52(5):705-716.<\/td>\nPDF<\/a><\/td>\n<\/tr>\n
2000<\/td>\nEstimation of primate speciation dates using local molecular clocks. <\/a>Yoder, A.D. and Z. Yang. Molecular Biology and Evolution, 17(7):1081-1090.<\/td>\nPDF<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

Year Title Format 2023 Estimation of species divergence times in presence of cross-species gene flow. Tiley G.P., Flouri T., Jiao X., Poelstra J.W., Xu B., Zhu T., Rannala B., Yoder… Read More<\/a><\/p>\n","protected":false},"author":5,"featured_media":1327,"parent":362,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"_exactmetrics_skip_tracking":false,"_exactmetrics_sitenote_active":false,"_exactmetrics_sitenote_note":"","_exactmetrics_sitenote_category":0,"footnotes":""},"class_list":["post-896","page","type-page","status-publish","has-post-thumbnail","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/yoderlab.org\/cms\/wp-json\/wp\/v2\/pages\/896","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/yoderlab.org\/cms\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/yoderlab.org\/cms\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/yoderlab.org\/cms\/wp-json\/wp\/v2\/users\/5"}],"replies":[{"embeddable":true,"href":"https:\/\/yoderlab.org\/cms\/wp-json\/wp\/v2\/comments?post=896"}],"version-history":[{"count":8,"href":"https:\/\/yoderlab.org\/cms\/wp-json\/wp\/v2\/pages\/896\/revisions"}],"predecessor-version":[{"id":2504,"href":"https:\/\/yoderlab.org\/cms\/wp-json\/wp\/v2\/pages\/896\/revisions\/2504"}],"up":[{"embeddable":true,"href":"https:\/\/yoderlab.org\/cms\/wp-json\/wp\/v2\/pages\/362"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/yoderlab.org\/cms\/wp-json\/wp\/v2\/media\/1327"}],"wp:attachment":[{"href":"https:\/\/yoderlab.org\/cms\/wp-json\/wp\/v2\/media?parent=896"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}