Next-generation ‘Omics


Year Title Format
2018 What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species. Campbell C.R., Poelstra J.W., and A.D. Yoder.Biological Journal of the Linnean Society. PDF

Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus). Larsen, P.A., Harris, R.A., Liu, Y., et al. BMC Biology.

2016 Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar’s forests past. Yoder, A.D., Campbell, C.R., Blanco, M.B., et al. Proceedings of the National Academy of Sciences. PDF
2016 Blood transcriptomes reveal novel parasitic zoonoses circulating in Madagascar’s lemurs. Larsen, P.A., Hayes, C.E., Williams, C.V., Junge, R.E., Razafindramanana, J., Mass, V., Rakotondrainibe, H., A.D. Yoder. Biology Letters, 12(1). PDF
2015 Evaluating whole transcriptome amplification for gene profiling experiments using RNA-Seq. Faherty, S.L., C.R. Campbell, P.A. Larsen, and A.D. Yoder. BMC Biotechnology, doi:10.1186/s12896-015-0155-7. PDF
2015 Assessing the utility of whole genome amplified DNA for next-generation molecular ecology. Blair, C., C.R. Campbell, and A.D. Yoder. Molecular Ecology Resources, doi: 10.111/1755-0998.12376. PDF
2014 Next-generation approaches to advancing eco-immunogenomic research in critically endangered primates. Larsen, P.A., C.R. Campbell, and A.D. Yoder. Molecular Ecology Resources, 14:1198–1209. PDF National Geographic Interview
2014 The utility of PacBio circular consensus sequencing
for characterizing complex gene families in
non-model organisms.
Larsen, P.A., A.M. Heilman, and A.D. Yoder. BMC Genomics, 15:720.
2013 The lemur revolution starts now: The genomic coming of age for a non-model organism.

Yoder, A.D. Molecular Phylogenetics and Evolution, 66:442-452.

Link to ScienceDirect Version

2012 Comparative RNA sequencing reveals substantial genetic variation in endangered primates. Perry, G.H., P. Melsted, J. C. Marioni, Y. Wang, R. Bainer, J.K. Pickrell, K. Michelini, S. Zehr, A.D. Yoder, M. Stephens, J.K. Pritchard, and Y. Gilad. Genome Research, 22:602-610. PDF
2011 Expression and Trans-Specific Polymorphism of Self-Incompatibility RNases in Coffea (Rubiaceae). Nowak, M.D., A. P. Davis, F. Anthony, and A. D. Yoder. PLoS ONE, 6(6):e21019. PDF
2009 Anonymous nuclear markers for Malagasy plated lizards (Zonosaurus). Noonan, B.P. and A.D. Yoder. Molecular Ecology Resources, 9:402-404. PDF
2008 The development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar’s lemurs. Horvath, J., Weisrock, D., Embry, S.L., Fiorentino, Balhoff, J.P., I., Kappeler, P., Wray, G.A., Willard, H., and A.D. Yoder. Genome Research 18(3): 489-499. PDF
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