Integrative Evolutionary Genetics in the Service of Conserving Biodiversity
Next-generation ‘Omics
| Year | Title | Format |
|---|---|---|
| 2024 | Benefits and Limits of Phasing Alleles for Network Inference of Allopolyploid Complexes. Tiley G.P., Crowl A.A., Manos P.S., Sessa E.B., Solís-Lemus C., Yoder A.D., and J.G. Burleigh. Systematic Biology. | |
| 2022 | RADseq data reveal a lack of admixture in a mouse lemur contact zone contrary to previous microsatellite results. Poelstra J.W., Montero B.K., Lüdemann J., Yang Z., Rakotondranary S.J., Hohenlohe P., Stetter N., Ganzhorn J.U., and A.D. Yoder. Proceedings of the Royal Society B. | |
| 2022 | Initiation of the primate genome project. Wu D.D., et al. Zoological Research. | |
| 2022 | The Earth BioGenome Project 2020: Starting the clock. Lewin H.A., et al. PNAS. | |
| 2021 | Comparative genomic analysis of sifakas (Propithecus) reveals selection for folivory and high heterozygosity despite endangered status. Guevara E.E., Webster T.H., Lawler R.R., Bradley B.J., Greene L.K., Ranaivonasy J., Ratsirarson J., Harris R.A., Liu Y., Murali S., Raveendran M., Hughes D.S., Muzny D.M., Yoder A.D., Worley K.C., and J. Rogers. Science Advances. | |
| 2019 | Pedigree-based measurement of the de novo mutation rate in the gray mouse lemur reveals a high mutation rate, few mutations in CpG sites, and a weak sex bias. Campbell C.R., Tiley G.P., Poelstra J.W., Hunnicutt K.E., Larsen P.A., Lee H., Thorne J.L., dos Reis M., and A.D. Yoder. bioRxiv. | |
| 2018 | What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species. Campbell C.R., Poelstra J.W., and A.D. Yoder.Biological Journal of the Linnean Society. | |
| 2017 |
Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus). Larsen, P.A., Harris, R.A., Liu, Y., et al. BMC Biology. |
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| 2016 | Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar’s forests past. Yoder, A.D., Campbell, C.R., Blanco, M.B., et al. Proceedings of the National Academy of Sciences. | |
| 2016 | Blood transcriptomes reveal novel parasitic zoonoses circulating in Madagascar’s lemurs. Larsen, P.A., Hayes, C.E., Williams, C.V., Junge, R.E., Razafindramanana, J., Mass, V., Rakotondrainibe, H., A.D. Yoder. Biology Letters, 12(1). | |
| 2015 | Evaluating whole transcriptome amplification for gene profiling experiments using RNA-Seq. Faherty, S.L., C.R. Campbell, P.A. Larsen, and A.D. Yoder. BMC Biotechnology, doi:10.1186/s12896-015-0155-7. | |
| 2015 | Assessing the utility of whole genome amplified DNA for next-generation molecular ecology. Blair, C., C.R. Campbell, and A.D. Yoder. Molecular Ecology Resources, doi: 10.111/1755-0998.12376. | |
| 2014 | Next-generation approaches to advancing eco-immunogenomic research in critically endangered primates. Larsen, P.A., C.R. Campbell, and A.D. Yoder. Molecular Ecology Resources, 14:1198–1209. | PDF National Geographic Interview |
| 2014 | The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms. Larsen, P.A., A.M. Heilman, and A.D. Yoder. BMC Genomics, 15:720. |
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| 2013 | The lemur revolution starts now: The genomic coming of age for a non-model organism.
Yoder, A.D. Molecular Phylogenetics and Evolution, 66:442-452. |
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| 2012 | Comparative RNA sequencing reveals substantial genetic variation in endangered primates. Perry, G.H., P. Melsted, J. C. Marioni, Y. Wang, R. Bainer, J.K. Pickrell, K. Michelini, S. Zehr, A.D. Yoder, M. Stephens, J.K. Pritchard, and Y. Gilad. Genome Research, 22:602-610. | |
| 2011 | Expression and Trans-Specific Polymorphism of Self-Incompatibility RNases in Coffea (Rubiaceae). Nowak, M.D., A. P. Davis, F. Anthony, and A. D. Yoder. PLoS ONE, 6(6):e21019. | |
| 2009 | Anonymous nuclear markers for Malagasy plated lizards (Zonosaurus). Noonan, B.P. and A.D. Yoder. Molecular Ecology Resources, 9:402-404. | |
| 2008 | The development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar’s lemurs. Horvath, J., Weisrock, D., Embry, S.L., Fiorentino, Balhoff, J.P., I., Kappeler, P., Wray, G.A., Willard, H., and A.D. Yoder. Genome Research 18(3): 489-499. |