Divergence Time Estimation

Year	Title	Format
2023	Estimation of species divergence times in presence of cross-species gene flow. Tiley G.P., Flouri T., Jiao X., Poelstra J.W., Xu B., Zhu T., Rannala B., Yoder A.D., and Z. Yang. Systematic Biology.	PDF
2023	Not one, but multiple radiations underlie the biodiversity of Madagascar’s endangered lemurs. Everson K.M., Pozzi L., Barrett M.A., Blair M.E., Donohue M.E., Kappeler P.M., Kitchener A.C., Lemmon A.R., Lemmon E.M., Pavón-Vázquez C.J., Radespiel U., Randrianambinina B., Rasoloarison R.M., Rasoloharijaona S., Roos C., Salmona J., Yoder A.D., Zenil-Ferguson R., Zinner D., and D.W. Weisrock. BioRxiv.	PDF
2021	Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events. Akkose U., Kaya V.O., Lindsey-Boltz L., Karagoz Z., Brown A.D., Larsen P.A., Yoder A.D., Sancar A., and O. Adebali. BMC genomics.	PDF
2020	Molecular clocks without rocks: new solutions for old problems. Tiley G.P., Poelstra J.W., Dos Reis M., Yang Z., and A.D. Yoder. Trends in Genetics.	PDF
2018	Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case. dos Reis M., Gunnell G.F., Barba-Montoya J., et al. Systematic Biology.	PDF
2013	Fossils Versus Clocks. Yoder, A.D. Science, 339:656-658.	PDF
2004	Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context. Yoder, A.D. and Z. Yang. Molecular Ecology, 13:757-773.	PDF
2003	Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse lemur species. Yang, Z. and A.D. Yoder. Systematic Biology, 52(5):705-716.	PDF
2000	Estimation of primate speciation dates using local molecular clocks. Yoder, A.D. and Z. Yang. Molecular Biology and Evolution, 17(7):1081-1090.	PDF